View source for Use case "Indexing with one or more programs (MOSFLM, XDS and Labelit)"

[[Category:Use Case]]
== Summary ==

This use case make use of three other use cases: indexing with MOSFLM, 
indexing with XDS and indexing with Labelit. The indexing should be
made either by one of these programs or with two or three programs in
parallel.

{| class="wikitable" style="text-align:left"
|- 
! Importance 
| Very important
|- 
! Priority
| High priority
|-
! Use Frequency
| Frequently used
|-
! Direct Actors
| Kernel
|-
! Pre-requirements
| Kernel running
|}

== Input ==

=== Required ===

Common data collection parameters:
* [[Beam position]]
* [[Wavelength]]
* [[Sample to detector distance]]
* [[Two-theta angle]]
* [[Image type]]

A list of images:
* Data collection parameters for each image:
** Path to image directory
** Image file name
** [[Phi start]]
** [[Oscillation width]]

* Prescreening acceptable ie spots on images

=== Optional ===

* Forced symmetry
* Choice of indexing program(s): (MOSFLM, XDS or Labelit)

== Output ==

=== Required ===
* Orientation matrix
* Unit cell parameters
* Possible Space group(s) (Laue group ?) 
* Parameters to judge success - this measure maybe different for different programs
* Rms error in spot positions
* Percentage of spots indexed
* shift in main beam position 
* rms error for the triclinic solution
* list of all possible solutions ( For each program ?)

=== Optional ===

== Main Success Scenario ==

Depending on the input, the indexing will be performed by one, two or three
different programs:

* [[Use case "Indexing with MOSFLM"]]
* [[Use case "Indexing with XDS"]]
* [[Use case "Indexing with Labelit"]]

== Variations ==

== Notes and Questions ==